Index

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__enter__() (hictkpy.cooler.FileWriter method) (hictkpy.cooler.SingleCellFile method) (hictkpy.File method) (hictkpy.hic.FileWriter method) (hictkpy.MultiResFile method) __exit__() (hictkpy.cooler.FileWriter method) (hictkpy.cooler.SingleCellFile method) (hictkpy.File method) (hictkpy.hic.FileWriter method) (hictkpy.MultiResFile method)

__getitem__() (hictkpy.cooler.SingleCellFile method) (hictkpy.MultiResFile method) __init__() (hictkpy.BinTable method) (hictkpy.cooler.FileWriter method) (hictkpy.cooler.SingleCellFile method) (hictkpy.File method) (hictkpy.hic.FileWriter method) (hictkpy.MultiResFile method) __iter__() (hictkpy.BinTable method) (hictkpy.PixelSelector method)

A

add_pixels() (hictkpy.cooler.FileWriter method) (hictkpy.hic.FileWriter method) add_pixels_from_dict() (hictkpy.cooler.FileWriter method) (hictkpy.hic.FileWriter method)

attributes() (hictkpy.cooler.SingleCellFile method) (hictkpy.File method) (hictkpy.MultiResFile method) avail_normalizations() (hictkpy.File method)

B

Bin (class in hictkpy) bin1 (hictkpy.Pixel property) bin1_id (hictkpy.Pixel property) bin2 (hictkpy.Pixel property) bin2_id (hictkpy.Pixel property)

bins() (hictkpy.cooler.FileWriter method) (hictkpy.cooler.SingleCellFile method) (hictkpy.File method) (hictkpy.hic.FileWriter method) BinTable (class in hictkpy)

C

cells() (hictkpy.cooler.SingleCellFile method) chrom (hictkpy.Bin property) chrom1 (hictkpy.Pixel property) chrom2 (hictkpy.Pixel property) chromosomes() (hictkpy.BinTable method) (hictkpy.cooler.FileWriter method) (hictkpy.cooler.SingleCellFile method) (hictkpy.File method) (hictkpy.hic.FileWriter method) (hictkpy.MultiResFile method)

close() (hictkpy.cooler.SingleCellFile method) (hictkpy.File method) (hictkpy.MultiResFile method) coord1() (hictkpy.PixelSelector method) coord2() (hictkpy.PixelSelector method) count (hictkpy.Pixel property)

D

describe() (hictkpy.PixelSelector method)

dtype() (hictkpy.PixelSelector method)

E

end (hictkpy.Bin property)

end1 (hictkpy.Pixel property) end2 (hictkpy.Pixel property)

F

fetch() (hictkpy.File method) File (class in hictkpy) FileWriter (class in hictkpy.cooler) (class in hictkpy.hic)

finalize() (hictkpy.cooler.FileWriter method) (hictkpy.hic.FileWriter method)

G

get() (hictkpy.BinTable method)

get_id() (hictkpy.BinTable method) get_ids() (hictkpy.BinTable method)

H

has_normalization() (hictkpy.File method) hictkpy module hictkpy.cooler module

hictkpy.hic module hictkpy.logging module

I

id (hictkpy.Bin property) is_cooler() (hictkpy.File method) (in module hictkpy) is_hic() (hictkpy.File method) (hictkpy.MultiResFile method) (in module hictkpy)

is_mcool() (hictkpy.MultiResFile method) is_mcool_file() (in module hictkpy) is_scool_file() (in module hictkpy)

K

kurtosis() (hictkpy.PixelSelector method)

M

max() (hictkpy.PixelSelector method) mean() (hictkpy.PixelSelector method) merge() (hictkpy.BinTable method) min() (hictkpy.PixelSelector method) module hictkpy hictkpy.cooler hictkpy.hic hictkpy.logging

MultiResFile (class in hictkpy)

N

nbins() (hictkpy.File method)

nchroms() (hictkpy.File method) nnz() (hictkpy.PixelSelector method)

P

path() (hictkpy.cooler.FileWriter method) (hictkpy.cooler.SingleCellFile method) (hictkpy.File method) (hictkpy.hic.FileWriter method) (hictkpy.MultiResFile method)

Pixel (class in hictkpy) PixelSelector (class in hictkpy)

R

rel_id (hictkpy.Bin property) resolution() (hictkpy.BinTable method) (hictkpy.cooler.FileWriter method) (hictkpy.cooler.SingleCellFile method) (hictkpy.File method)

resolutions() (hictkpy.hic.FileWriter method) (hictkpy.MultiResFile method)

S

setLevel() (in module hictkpy.logging) SingleCellFile (class in hictkpy.cooler) size() (hictkpy.PixelSelector method) skewness() (hictkpy.PixelSelector method)

start (hictkpy.Bin property) start1 (hictkpy.Pixel property) start2 (hictkpy.Pixel property) sum() (hictkpy.PixelSelector method)

T

to_arrow() (hictkpy.BinTable method) (hictkpy.PixelSelector method) to_coo() (hictkpy.PixelSelector method) to_csr() (hictkpy.PixelSelector method) to_df() (hictkpy.BinTable method) (hictkpy.PixelSelector method)

to_numpy() (hictkpy.PixelSelector method) to_pandas() (hictkpy.BinTable method) (hictkpy.PixelSelector method) type() (hictkpy.BinTable method)

U

uri() (hictkpy.File method)

V

variance() (hictkpy.PixelSelector method)

W

weights() (hictkpy.File method)